
This vanilla bean crème brûlée cheesecake cupcake recipe combines two classic desserts into one exquisite bite-sized treat. The marriage of silky cheesecake with the iconic caramelized sugar top of crème brûlée creates an unforgettable dessert experience that will impress even the most discerning guests.
I first made these cupcakes for my sister's engagement party and they disappeared within minutes. The satisfying crack of breaking through the caramelized sugar top followed by the creamy cheesecake beneath became an instant signature dessert in my household.
Ingredients
- Graham cracker crumbs: provides the perfect buttery foundation that complements the creamy filling
- Butter: binds the crust together and adds richness
- Cream cheese: creates that signature tangy cheesecake flavor use full fat for best results
- Sugar: sweetens the filling without overpowering the vanilla
- Vanilla bean: offers superior flavor compared to extract look for plump beans that are flexible not dry
- Eggs: provide structure and silkiness to the cheesecake
- Heavy cream: creates an ultra smooth and luscious texture
- Granulated sugar for brûlée topping: transforms into the distinctive crackling caramel crust
Step-by-Step Instructions
- Prepare the crust:
- Combine graham cracker crumbs with melted butter until the mixture resembles wet sand. Press firmly into cupcake liners using the bottom of a small glass to create an even compact layer that won't crumble when served.
- Create the filling:
- Beat cream cheese until absolutely smooth with no lumps whatsoever. This is crucial for a silky texture. Add sugar and vanilla bean seeds mixing thoroughly. The tiny black specks throughout your batter are visual proof of authentic vanilla flavor.
- Add the eggs:
- Incorporate eggs one at a time on low speed. Overmixing at this stage can introduce too much air leading to cracks so mix just until combined. Fold in heavy cream gently to maintain the dense creamy texture.
- Bake with care:
- Fill liners three quarters full to leave room for slight rising. Bake at a moderate 325°F to prevent the tops from cracking. Cupcakes are done when centers are just set with a slight jiggle they will continue firming up while cooling.
- Create the brûlée finish:
- Just before serving sprinkle a thin even layer of sugar over each cupcake. Hold your kitchen torch a few inches away moving constantly to achieve that perfect amber caramelization without burning.

The vanilla bean is truly the star of this recipe. The first time I splurged on real vanilla beans instead of extract my family immediately noticed the difference. My daughter now helps me split and scrape the beans which has become our special baking ritual whenever making these cupcakes.
Achieving Perfect Caramelization
The brûlée topping is all about technique. Sprinkle sugar in a thin even layer completely covering the surface. Move your torch in small circular motions maintaining about 2 inches distance from the sugar. The goal is to melt the sugar until it bubbles then turns amber not burnt. If your sugar layer is too thick it may not caramelize evenly. Practice makes perfect so don't be discouraged if your first attempt isn't Instagram worthy.
Make Them Mini
For cocktail parties or dessert buffets consider making mini versions in petit four cups. Reduce baking time to 15 minutes and use a smaller amount of sugar for the brûlée topping. These bite sized versions allow guests to enjoy the dessert without committing to a full cupcake. I discovered this variation when catering my best friend's baby shower and they were the most requested item on the menu.
Flavor Variations
While vanilla bean creates a classic flavor profile these cheesecake cupcakes can be easily customized. Add lemon zest for brightness bourbon for warmth or espresso powder for a mocha twist. My personal favorite variation includes folding in 1/4 cup of crushed freeze dried raspberries into the batter creating beautiful pink speckles and a subtle fruity note that balances the richness. The beauty of this recipe is its versatility while maintaining that signature crème brûlée finish.

Storage Tips
These cupcakes can be refrigerated for up to 5 days but add the sugar topping right before serving. The moisture from the refrigerator will soften the caramelized sugar diminishing that satisfying crack. If you must store them after torching place them uncovered in the refrigerator for no more than 2 hours. For longer storage freeze the cupcakes without the brûlée topping in an airtight container for up to 1 month thaw overnight in the refrigerator before torching.
Frequently Asked Questions About the Recipe
- → Can I make these Vanilla Bean Cheesecake Cupcakes ahead of time?
Yes! You can prepare these cupcakes up to 2 days in advance. Make the cheesecake cupcakes as directed and store them in the refrigerator. Add the sugar topping and brûlée it just before serving for the best texture contrast.
- → What can I use if I don't have a kitchen torch?
If you don't have a kitchen torch, you can place the sugar-topped cupcakes under a preheated broiler for 1-2 minutes, watching very carefully to avoid burning. The effect won't be quite as controlled as with a torch, but it will still create a caramelized top.
- → Can I substitute vanilla extract for the vanilla bean?
Yes, you can substitute 1-2 teaspoons of pure vanilla extract for the vanilla bean. However, using real vanilla beans provides those signature flecks and a more intense, authentic flavor that makes these cupcakes special.
- → How do I know when the cupcakes are properly baked?
The cupcakes are done when the centers are just set but still have a slight jiggle. They should not be completely firm (which indicates overbaking). They'll continue to set as they cool. A slight crack on top is normal for cheesecake.
- → What's the best way to store leftover cupcakes?
Store leftover cupcakes in an airtight container in the refrigerator for up to 3 days. Note that once brûléed, the sugar topping may soften over time, so it's best to caramelize the sugar right before serving.
- → Can I freeze these cheesecake cupcakes?
Yes, you can freeze the cupcakes without the brûléed topping. Wrap them individually in plastic wrap, then place in a freezer bag for up to 1 month. Thaw overnight in the refrigerator, then add the sugar topping and brûlée just before serving.